Guy Hagen, Ph.D.

1. Tristan C. Paul and Guy Hagen, "Improving optical sectioning with spinning disk structured illumination microscopy," Opt. Express 31, 38831-38839 (2023)
2. Paul, Tristan C., Karl A. Johnson, and Guy M. Hagen. 2023. "Super-Resolution Imaging of Neuronal Structures with Structured Illumination Microscopy" Bioengineering 10, no. 9: 1081. https://doi.org/10.3390/bioengineering10091081
3. Johnson, Karl A., Daniel Noble, Rosa Machado, Tristan C. Paul, and Guy M. Hagen. 2022. "Flexible Multiplane Structured Illumination Microscope with a Four-Camera Detector" Photonics 9, no. 7: 501. https://doi.org/10.3390/photonics9070501
4. Guy M Hagen, Justin Bendesky, Rosa Machado, Tram-Anh Nguyen, Tanmay Kumar, Jonathan Ventura, Fluorescence microscopy datasets for training deep neural networks, GigaScience, Volume 10, Issue 5, May 2021, giab032, https://doi.org/10.1093/gigascience/giab032
5. Karl A Johnson, Guy M Hagen, Artifact-free whole-slide imaging with structured illumination microscopy and Bayesian image reconstruction, GigaScience, Volume 9, Issue 4, April 2020, giaa035, https://doi.org/10.1093/gigascience/giaa035
6. Ovesný, M., Křížek, P., Švindrych, Z., and Hagen, G. M. (2014). High density 3D localization microscopy using sparse support recovery. Optics Express, 22, 31263-31276.
7. Lukeš, T., Křížek, P., Švindrych, Z., Benda, J., Ovesný, M., Fliegel, K., Klima, M., and Hagen, G. M., (2014). 3D super-resolution structured illumination microscopy with maximum; a posteriori probability image estimation. Optics Express, 22, 29805-29817.
8. Lukeš, T., Hagen, G. M., Křížek, P., Švindrych, Z., Klima, M. (2014). Comparison of image reconstruction methods for structured illumination microscopy. Proc. SPIE 9129, 91293J.
9. Ovesný, M., Křížek, P., Borkovec, J., Švindrych, Z., and Hagen, G. M. (2014). ThunderSTORM: a comprehensive ImageJ plugin for PALM and STORM data analysis and super-resolution imaging. Bioinformatics, 30, 2389-2390.
10. Křížek, P., Raška, I., and Hagen, G. M., (2012). Flexible structured illumination microscope with a programmable illumination array. Optics Express, 20, 24585-24599.
11. Křížek, P., Raška, I., and Hagen, G. M., (2011). Minimizing detection errors in single molecule localization microscopy. Optics Express 19, 3226-3235.

• Structured illumination microscopy (SIM) (Image Captured)
• Single molecule localization microscopy (PALM/STORM)
• Bio-image informatics
• Live cell imaging
• Total internal reflection fluorescence microscopy (TIRF)

https://sites.google.com/view/hagen-lab/home